Gene MMAR_4465 in Mycobacterium marinum M
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virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene namemfd
Gene length3669 bp
IdentifierMMAR_4465
Location 5483622 bp
Protein summary information
Molecular mass131433.0 Da
Isoelectric point5.34
Protein length1223 amino acids
Structural information
PFAMB2HDI8
Orthologs
M. tuberculosis H37RvRv1020
Cross-references
UniProtB2HDI8
Gene OntologyAtp binding, Atp-dependent helicase activity, Dna repair, Damaged dna binding, Regulation of transcription, dna-dependent, Sequence-specific dna binding transcription factor activity
Precomputed results
BLASTReport
General annotation
TypeCDS
Functioninvolved in nucleotide excision repair. necessary for strand-specific repair. a lesion in the template strand blocks the RNA polymerase complex (RNAP). the RNAP-DNA-RNA complex is specifically recognized by TrcF which releases RNAP and the truncated transcript; the TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.
ProductTRANSCRIPTION-REPAIR coupling factor Mfd (TrcF)
Comments-
Functional categoryInformation pathways
Coordinates
TypeStartEndOrientation
CDS54836225487290-
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Protein sequence
>Mycobacterium marinum M|MMAR_4465|mfd
MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAHPEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAATSDSGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDIGRTSLSEDDAAATASGKERQAR
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