Gene Mb1613c
in Mycobacterium bovis AF2122/97
General annotation
| Type | CDS |
| Function | Unknown |
| Product | Partial REP13E12 repeat protein |
| Comments | Mb1613c, -, len: 333 aa. Equivalent to Rv1587c,len: 217 aa, from Mycobacterium tuberculosis strain H37Rv,(97.2% identity in 217 aa overlap). Partial REP13E12 repeat protein (see citation below), nearly identical (but has been interrupted by phiRv1 prophage) to Q50655|MTCY251.13c HYPOTHETICAL 34.6 KD PROTEIN from M. tuberculosis (317 aa), FASTA results: opt: 2020, E(): 0,(98.0% identity in 302 aa overlap); Rv0094c|MTCY251.13c (317 aa), FASTA results: E(): 0, (100.0% identity in 217 aa overlap). Codon usage suggests that translation may involve frameshifting of Rv1588c mRNA in poly_C stretch into reading frame of Rv1587c. 3' end found in Rv1572c. REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv and Mycobacterium bovis, Rv1587 possibly exists as a pseudogene that has been disrupted when the phage entered. |
| Functional category | Insertion seqs and phages |
| Mutant | Check for mutants available at TARGET website |
Coordinates
| Type | Start | End | Orientation |
|---|---|---|---|
| CDS | 1773528 | 1774529 | - |
Genomic sequence
Feature type
Upstream flanking region (bp)
Downstream flanking region (bp)
Update
Protein sequence
>Mycobacterium bovis AF2122-97|Mb1613c|Mb1613c
MLAKLAAPGATNPDDHTPVIDTTPDAAAIDRDTRSQAQRNHDGLLAGLRALIASGELGQHNGLPVSIVVTTTLTDLQTGAGKGFTGGGTLLPMADVIRMTSHAHHYSPASGRYPQAIFDHGTPLALYHTKRLASPAQRIMLFANDRGCTKPGCDAPAYHSQAHHVTGWTSTGRTDITDLTLACDPDNRLAEKGWTTRKNTHGHTEWLPPPHLDHGQPWTCEIHYTCACCCLPPNLRRPLRRTARRGPPTRGLPKAVRAAKMGARRVPRQRRQRINRQAPPRLRADVGRHHRRQDRRRGGLGPGPAPSPSHRAGSLHVISRREAAGPGHRRRRR
Bibliography
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