Gene MMAR_1801 in Mycobacterium marinum M
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virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene namerimM
Gene length525 bp
IdentifierMMAR_1801
Location 2198476 bp
Protein summary information
Molecular mass18606.0 Da
Isoelectric point4.74
Protein length175 amino acids
Structural information
PFAMB2HJL4
Orthologues
M. tuberculosisRv2907c
Cross-references
UniProtB2HJL4
Gene OntologyRrna processing, Ribosomal small subunit biogenesis, Ribosome, Ribosome binding
Precomputed results
BLASTReport
General annotation
TypeCDS
Functionessential for efficient processing of 16S rRNA. probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits. it could be some accessory protein needed for efficient assembly of the 30S subunit. RimM is needed in a step prior to RbfA during the maturation of 16S rRNA. has affinity for free ribosomal 30S subunits but not for 70S ribosomes.
Product16S rRNA processing protein RimM
Comments-
Functional categoryInformation pathways
Coordinates
TypeStartEndOrientation
CDS21984762199000+
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Protein sequence
>Mycobacterium marinum M|MMAR_1801|rimM
MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS
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