Gene Mb3955c in Mycobacterium bovis AF2122/97
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virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene namerpmH
Gene length144 bp
IdentifierMb3955c
Location 4344746 bp
Protein summary information
Molecular mass5624.61 Da
Isoelectric point13.6481
Protein length47 amino acids
Cross-references
UniProtP0A5W5
UniProtKB/TrEMBLX2BPR0, P0A5W5
General annotation
TypeCDS
FunctionUnknown
Product50S RIBOSOMAL PROTEIN L34 RPMH
CommentsMb3955c, rpmH, len: 47 aa. Equivalent to Rv3924c,len: 47 aa, from Mycobacterium tuberculosis strain H37Rv,(100.0% identity in 47 aa overlap). rpmH, 50s ribosomal protein l34 (see citations below), equivalent to many mycobacterial 50S RIBOSOMAL PROTEIN L34 e.g. P46386|RL34_MYCLE|RPMH|ML2713 from Mycobacterium leprae (47 aa), FASTA scores: opt: 287, E(): 8.5e-17, (91.5% identity in 47 aa overlap); and Q9L7L8|RL34_MYCPA|RPMH from M. paratuberculosis (47 aa), FASTA scores: opt: 281,E(): 2.6e-16, (89.35% identity in 47 aa overlap). Also highly similar to other ribosomal proteins e.g. P27901|RL34_STRCO|RPMH|STH24.02 from Streptomyces coelicolor (45 aa), FASTA scores: opt: 234, E(): 1.4e-12,(79.05% identity in 43 aa overlap); and P05647|RL34_BACSU|RPMH from Bacillus subtilis (44 aa) FASTA scores: opt: 229, E(): 3.7e-12, (72.35% identity in 47 aa overlap); etc. Contains PS00784 Ribosomal protein L34 signature. BELONGS TO THE L34P FAMILY OF RIBOSOMAL PROTEINS.
Functional category
Mutant
Check for mutants available at TARGET website
Coordinates
TypeStartEndOrientation
CDS43447464344889-
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Protein sequence
>Mycobacterium bovis AF2122-97|Mb3955c|rpmH
MTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA
Bibliography
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